CoRegNet is an R/Bioconductor package to analyze large-scale transcriptomic data by highlighting sets of co-regulators

Based on a transcriptomic dataset, CoRegNet can be used to: reconstruct a large-scale co-regulatory network, integrate regulation evidences such as transcription factor binding sites and ChIP data, estimate sample-specific regulator activity, identify cooperative transcription factors and analyze the sample-specific combinations of active regulators through an interactive visualization tool.

Associated publication(s)

  • Nicolle R, Radvanyi F and Elati M (2015). CoRegNet: reconstruction and integrated analysis of co-regulatory networks. Bioinformatics.